Datasets Used in Marc Suchard's Publications

The following are the datasets analyzed in Marc Suchard's recent publications. Molecular sequence data are in Phylip format unless otherwise noted.

File Name

File Size

Description

mtprim9.phy

<0.1MB

mtDNA Primate dataset.
Suchard MA, Weiss RE, Sinsheimer JS (2004) Testing a molecular clock without an outgroup: derivations of induced priors on branch length restrictions in a Bayesian framework, Systematic Biology, 52:48-54.

ES.tgz

<0.1MB

SRY, DAX1 and SOX9 datasets.
Suchard MA, Weiss RE, Sinsheimer JS, Dorman KS, Patel M, McCabe ERB (2003) Evolutionary similarity among genes, Journal of the American Statistical Assocation, 98:653-662.

KAL153.tgz

<0.1MB

HIV strain KAL153 genome dataset.
Suchard MA, Weiss RE, Dorman KS, Sinsheimer JS (2003) Inferring spatial phylogenetic variation along nucleotide sequences: a multiple change-point model, Journal of the American Statistical Association, 98:427-437.

BFHIV.tgz

<0.1MB

HIV strains RW022, VI557 and RF gag gene datasets.
Suchard MA, Weiss RE, Dorman KS, Sinsheimer JS (2002) Oh brother, where art thou? A Bayes factor test for recombination with uncertain heritage, Systematic Biology, 51:715-728.

MultiPartite-data.tgz

<0.1MB

Multiple mtDNA gene and longitudinal HIV partition datasets.
Suchard MA, Kitchen CMR, Sinsheimer JS, Weiss RE (2003) Hierarchical phylogenetic models for analyzing multipartite sequence data, Systematic Biology, 52:649-664.